From jrodgers at bcm.tmc.edu Tue Jan 18 21:18:47 2005 From: jrodgers at bcm.tmc.edu (John Rodgers) Date: Tue Jan 18 21:19:11 2005 Subject: [Papyrus-L] ISI search report format? In-Reply-To: <5.2.1.1.0.20040222113328.0354f048@mailbox10.utcc.utoronto. ca> References: <005001c3f8cc$8b901bc0$30e33ecb@nutritio9cxwrj> <6.0.1.1.2.20040221190607.01c7cec0@faculty.bcm.tmc.edu> <5.2.1.1.0.20040222113328.0354f048@mailbox10.utcc.utoronto.ca> Message-ID: <6.0.1.1.2.20050118201427.01f8e400@faculty.bcm.tmc.edu> Dear Listers, I thought I knew how to do this but maybe someone can save me relearning this: I have a listing from ISI/Web of Science with the following format: PT J AU Dawicki, W Bertram, EM Sharpe, AH Watts, TH TI 4-1BB and OX40 act independently to facilitate robust CD8 and CD4 recall responses SO JOURNAL OF IMMUNOLOGY AB Mice deficient in OX40 or 4-1BB costimulatory pathways show defects in T cell recall responses, with predominant effects on CD4 vs CD8 T cells, respectively. However, OX40L can also stimulate CD8 T cells and CD8 recall responses. PD NOV 15 PY 2004 VL 173 IS 10 BP 5944 EP 5951 UT ISI:000224999000008 ER Is there a canned import file I can use? The IMPORT.FLB has several formats labeled Websci but they don't correspond at all. thanks! -john rodgers From dave at ResearchSoftwareDesign.com Wed Jan 19 03:22:05 2005 From: dave at ResearchSoftwareDesign.com (Dave Goldman) Date: Wed Jan 19 03:22:28 2005 Subject: [Papyrus-L] ISI search report format? In-Reply-To: <6.0.1.1.2.20050118201427.01f8e400@faculty.bcm.tmc.edu> References: <005001c3f8cc$8b901bc0$30e33ecb@nutritio9cxwrj> <6.0.1.1.2.20040221190607.01c7cec0@faculty.bcm.tmc.edu> <5.2.1.1.0.20040222113328.0354f048@mailbox10.utcc.utoronto.ca> <6.0.1.1.2.20050118201427.01f8e400@faculty.bcm.tmc.edu> Message-ID: John Rodgers asked: > I thought I knew how to do this but maybe someone can save me >relearning this: I have a listing from ISI/Web of Science with the >following format: >... >... >Is there a canned import file I can use? The IMPORT.FLB has >several formats labeled Websci but they don't correspond at all. Give "WEB SCI 2003" a try. -- Dave Goldman (dave@ResearchSoftwareDesign.com) Research Software Design The PAPYRUS Bibliography System 617 SW Hume Street Portland OR 97219-4458 (U.S.A.) fax 503-452-8920 Technical Support: support@ResearchSoftwareDesign.com Other Questions: info@ResearchSoftwareDesign.com Web: http://www.ResearchSoftwareDesign.com/ From jrodgers at bcm.tmc.edu Wed Jan 19 06:33:21 2005 From: jrodgers at bcm.tmc.edu (John Rodgers) Date: Wed Jan 19 06:33:42 2005 Subject: [Papyrus-L] ISI search report format? In-Reply-To: References: <005001c3f8cc$8b901bc0$30e33ecb@nutritio9cxwrj> <6.0.1.1.2.20040221190607.01c7cec0@faculty.bcm.tmc.edu> <5.2.1.1.0.20040222113328.0354f048@mailbox10.utcc.utoronto.ca> <6.0.1.1.2.20050118201427.01f8e400@faculty.bcm.tmc.edu> Message-ID: <6.0.1.1.2.20050119045739.030f2480@faculty.bcm.tmc.edu> Works great- thanks Dave- I didn't realize I didn'thave that update of import. -john rodgers >> I thought I knew how to do this but maybe someone can save me >> relearning this: I have a listing from ISI/Web of Science with the >> following format: >>... >>... >>Is there a canned import file I can use? The IMPORT.FLB has several >>formats labeled Websci but they don't correspond at all. > >Give "WEB SCI 2003" a try. > >-- > Dave Goldman (dave@ResearchSoftwareDesign.com) From jrodgers at bcm.tmc.edu Sun Feb 6 12:12:56 2005 From: jrodgers at bcm.tmc.edu (John Rodgers) Date: Sun Feb 6 12:13:16 2005 Subject: [Papyrus-L] examples of published plagiarisms Message-ID: <6.0.1.1.2.20050206110709.0267c088@faculty.bcm.tmc.edu> Dear Listers, an unusual subject for our group: I'm preparing the syllabus for a course in Scientific Writing and would like to include examples of published plagiarisms. I want my students to analyze these examples, so the more examples, the better. I have several recent examples from a field _outside_ this List topic, but would like further examples. To avoid embarassing colleagues or living persons- you could respond to me iydirectly at jrodgers@bcm.tmc.edu I am aware that outside the sciences there has been a cottage industry in "exposing" literary plagiarisms. While I find these interesting, I am more interested in examples in the professional literature- journal articles. These might range from whole-sale plagiarisms of unattributed texts to "unprofessional paraphrasing", to more subtle examples of cribbed citations, or mis-attributed ideas. Of greatest value to me are the "sciences" but I have a wide appetite. This group is self-selected for persons obsessed with citation issues- so I have high hopes! Thank you, John John R. Rodgers, PhD Department of Immunology Room M929 Baylor College of Medicine One Baylor Plaza Houston, Texas 770303 phone: 713-798-3903 fax: 713-798-3700 email: jrodgers@bcm.tmc.edu From Charles.Estill at oregonstate.edu Fri Mar 11 20:56:03 2005 From: Charles.Estill at oregonstate.edu (Estill, Charles) Date: Fri Mar 11 20:56:06 2005 Subject: [Papyrus-L] text extract Message-ID: <7680BA8AF41EF84E840E63F895E237A6C8ADFC@mtadams.nws.oregonstate.edu> Dear List, When I perform a text extract the NEW file has boxes and ASCII type figures in the text and some of the text is missing or formatted wrong. I am using Word 2003. Does anyone know how to fix this. Thanks, Chuck -------------- next part -------------- An HTML attachment was scrubbed... URL: http://five.pairlist.net/pipermail/papyrus-l/attachments/20050311/8d7f81ef/attachment.html From Thomas.Gill at ynhh.org Fri Mar 11 20:56:39 2005 From: Thomas.Gill at ynhh.org (Thomas Gill) Date: Fri Mar 11 20:57:10 2005 Subject: [Papyrus-L] text extract (Out of Office) Message-ID: I will be returning from vacation on March 21. This message originates from Yale New Haven Health System. The information contained in this message may be privileged and confidential. If you are the intended recipient, you must maintain this message in a secure and confidential manner. If you are not the intended recipient, please notify the sender immediately and destroy this message. Thank you. From raisa.deber at utoronto.ca Fri Mar 11 21:31:17 2005 From: raisa.deber at utoronto.ca (Raisa Deber) Date: Fri Mar 11 21:31:44 2005 Subject: [Papyrus-L] text extract In-Reply-To: <7680BA8AF41EF84E840E63F895E237A6C8ADFC@mtadams.nws.oregonstate.edu> References: <7680BA8AF41EF84E840E63F895E237A6C8ADFC@mtadams.nws.oregonstate.edu> Message-ID: On Mar 11, 2005, at 8:56 PM, Estill, Charles wrote: > Dear List, > > ? > > When I perform a text extract the NEW file has boxes and ASCII type > figures in the text and some of the text is missing or formatted > wrong. I am using Word 2003. Does anyone know how to fix this. Word changed its file format. Save it in an earlier version of word (Word 6.0/95 for Windows should work). Then text extract. Let me know if it works. Raisa Deber > > ? > > Thanks, > > ? > > Chuck > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > Raisa Deber, PhD Professor, Department of Health Policy, Management and Evaluation University of Toronto Director, M-THAC (From Medicare to Home and Community) Research Unit (www.m-thac.org) McMurrich Building, 2nd floor 12 Queen's Park Crescent West Toronto, Ontario M5S 1A8 Canada phone: (416) 978-8366 fax: (416) 978-7350 e-mail: raisa.deber@utoronto.ca From Charles.Estill at oregonstate.edu Fri Mar 11 22:13:59 2005 From: Charles.Estill at oregonstate.edu (Estill, Charles) Date: Fri Mar 11 22:14:01 2005 Subject: [Papyrus-L] text extract Message-ID: <7680BA8AF41EF84E840E63F895E237A6C8ADFD@mtadams.nws.oregonstate.edu> Thank you Raisa. Unfortunately that approach did not work. I saved the document as a rtf file and then did the extraction but the NEW file was unreadable. I am open to suggestions. Chuck -----Original Message----- From: papyrus-l-bounces@ResearchSoftwareDesign.com [mailto:papyrus-l-bounces@ResearchSoftwareDesign.com] On Behalf Of Raisa Deber Sent: Friday, March 11, 2005 6:31 PM To: Papyrus Discussion List Cc: Raisa Deber Subject: Re: [Papyrus-L] text extract On Mar 11, 2005, at 8:56 PM, Estill, Charles wrote: > Dear List, > > ? > > When I perform a text extract the NEW file has boxes and ASCII type > figures in the text and some of the text is missing or formatted > wrong. I am using Word 2003. Does anyone know how to fix this. Word changed its file format. Save it in an earlier version of word (Word 6.0/95 for Windows should work). Then text extract. Let me know if it works. Raisa Deber > > ? > > Thanks, > > ? > > Chuck > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > Raisa Deber, PhD Professor, Department of Health Policy, Management and Evaluation University of Toronto Director, M-THAC (From Medicare to Home and Community) Research Unit (www.m-thac.org) McMurrich Building, 2nd floor 12 Queen's Park Crescent West Toronto, Ontario M5S 1A8 Canada phone: (416) 978-8366 fax: (416) 978-7350 e-mail: raisa.deber@utoronto.ca _______________________________________________ Papyrus-L mailing list Papyrus-L@ResearchSoftwareDesign.com http://five.pairlist.net/mailman/listinfo/papyrus-l From Thomas.Gill at ynhh.org Fri Mar 11 22:15:00 2005 From: Thomas.Gill at ynhh.org (Thomas Gill) Date: Fri Mar 11 22:15:38 2005 Subject: [Papyrus-L] text extract (Out of Office) Message-ID: I will be returning from vacation on March 21. This message originates from Yale New Haven Health System. The information contained in this message may be privileged and confidential. If you are the intended recipient, you must maintain this message in a secure and confidential manner. If you are not the intended recipient, please notify the sender immediately and destroy this message. Thank you. From raisa.deber at utoronto.ca Fri Mar 11 23:03:19 2005 From: raisa.deber at utoronto.ca (Raisa Deber) Date: Fri Mar 11 23:03:31 2005 Subject: [Papyrus-L] text extract In-Reply-To: <7680BA8AF41EF84E840E63F895E237A6C8ADFD@mtadams.nws.oregonstate.edu> References: <7680BA8AF41EF84E840E63F895E237A6C8ADFD@mtadams.nws.oregonstate.edu> Message-ID: On Mar 11, 2005, at 10:13 PM, Estill, Charles wrote: > Thank you Raisa. > > Unfortunately that approach did not work. I saved the document as a > rtf file and then did the extraction but the NEW file was unreadable. > I am open to suggestions. No, don't save it as an rtf. That doesn't work; it seems to keep too many of Word's formatting oddities. Save it as Word 6/95 for Windows, which seems to strip out some of the odd new codes which Word introduced. Let me know. Raisa > > Chuck > > -----Original Message----- > From: papyrus-l-bounces@ResearchSoftwareDesign.com > [mailto:papyrus-l-bounces@ResearchSoftwareDesign.com] On Behalf Of > Raisa Deber > Sent: Friday, March 11, 2005 6:31 PM > To: Papyrus Discussion List > Cc: Raisa Deber > Subject: Re: [Papyrus-L] text extract > > > On Mar 11, 2005, at 8:56 PM, Estill, Charles wrote: > >> Dear List, >> >> ? >> >> When I perform a text extract the NEW file has boxes and ASCII type >> figures in the text and some of the text is missing or formatted >> wrong. I am using Word 2003. Does anyone know how to fix this. > Word changed its file format. Save it in an earlier version of word > (Word 6.0/95 for Windows should work). Then text extract. > Let me know if it works. > Raisa Deber > >> >> ? >> >> Thanks, >> >> ? >> >> Chuck >> _______________________________________________ >> Papyrus-L mailing list >> Papyrus-L@ResearchSoftwareDesign.com >> http://five.pairlist.net/mailman/listinfo/papyrus-l >> > Raisa Deber, PhD > Professor, Department of Health Policy, Management and Evaluation > University of Toronto > Director, M-THAC (From Medicare to Home and Community) Research Unit > (www.m-thac.org) > McMurrich Building, 2nd floor > 12 Queen's Park Crescent West > Toronto, Ontario M5S 1A8 Canada > phone: (416) 978-8366 > fax: (416) 978-7350 > e-mail: raisa.deber@utoronto.ca > > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > > Raisa Deber, PhD Professor, Department of Health Policy, Management and Evaluation University of Toronto Director, M-THAC (From Medicare to Home and Community) Research Unit (www.m-thac.org) McMurrich Building, 2nd floor 12 Queen's Park Crescent West Toronto, Ontario M5S 1A8 Canada phone: (416) 978-8366 fax: (416) 978-7350 e-mail: raisa.deber@utoronto.ca From Thomas.Gill at ynhh.org Fri Mar 11 23:04:19 2005 From: Thomas.Gill at ynhh.org (Thomas Gill) Date: Fri Mar 11 23:04:52 2005 Subject: [Papyrus-L] text extract (Out of Office) Message-ID: I will be returning from vacation on March 21. This message originates from Yale New Haven Health System. The information contained in this message may be privileged and confidential. If you are the intended recipient, you must maintain this message in a secure and confidential manner. If you are not the intended recipient, please notify the sender immediately and destroy this message. Thank you. From hessgk at delmnh.org Mon Mar 14 09:39:58 2005 From: hessgk at delmnh.org (Gene Hess) Date: Mon Mar 14 09:40:00 2005 Subject: [Papyrus-L] Export to MARC format Message-ID: Dear All, My intuitional library is beginning to database its library holdings. It is using a program called ResourceMate. Apparently this program can only import records in MARC format or whatever it uses for Library of Congress downloads. Has anyone extracted Papyrus records and converted them to the MARC format? Or do you know some one who has or a Web site that can help? Any help is much appreciated. Gene K. Hess Collections Manager - Vertebrates Delaware Museum of Natural History P.O. Box 3937 Wilmington, DE 19807 302-658-9111 voice 302-658-2610 fax hessgk@delmnh.org From jgorrin at ccnt-spain.com Wed Mar 23 04:06:20 2005 From: jgorrin at ccnt-spain.com (Jeannette Gorrin) Date: Wed Mar 23 04:06:39 2005 Subject: [Papyrus-L] Can i use this library in Linux? Message-ID: Hi: We are working in a project, where we migrate a software from Machintosh to Linux. In this software we are using Papyrus 3.0 and as far as i know Papyrus doesn't have Linux version. If we compile Unix version in a Linux environment, are we going to have many problems? i explain myself, Is it possible to use Unix version to be compiled in Linux? Thanks in advance. Jeannette. From jgorrin at ccnt-spain.com Wed Mar 23 04:17:32 2005 From: jgorrin at ccnt-spain.com (Jeannette Gorrin) Date: Wed Mar 23 04:17:51 2005 Subject: [Papyrus-L] Use Papyrus in Linux In-Reply-To: References: Message-ID: > Hi: > > We are working in a project, where we migrate a software from > Machintosh to Linux. In this software we are using Papyrus 3.0 and as > far as i know Papyrus doesn't have Linux version. If we compile Unix > version in a Linux environment, are we going to have many problems? > i explain myself, Is it possible to use Unix version to be compiled in > Linux? > > Thanks in advance. > Jeannette. > From dsbrown at cyllene.uwa.edu.au Wed Mar 23 09:31:23 2005 From: dsbrown at cyllene.uwa.edu.au (dsbrown@cyllene.uwa.edu.au) Date: Wed Mar 23 09:31:32 2005 Subject: [Papyrus-L] Use Papyrus in Linux In-Reply-To: References: Message-ID: <20050323223123.quhpey8s4gcgksgk@webmail-1.ucs.uwa.edu.au> Hello Jeanette, Quoting Jeannette Gorrin : >> Hi: >> >> We are working in a project, where we migrate a software from >> Machintosh to Linux. In this software we are using Papyrus 3.0 and >> as far as i know Papyrus doesn't have Linux version. If we compile >> Unix version in a Linux environment, are we going to have many >> problems? >> i explain myself, Is it possible to use Unix version to be compiled >> in Linux? Papyrus 3.0 eh? I wonder if we are talking about the same "Papyrus"? I am aware of Papyrus 3.0 which is a file format used in the neuroimaging world, related to the DICOM 3 format. If not, and we are talking about Papyrus the citation software, then there is a DOS version (which runs under Windows) and a MAC version but not a Linux version. Several of us on this list did ask Dave Goldman the originator of Papyrus if he would consider open-sourcing or otherwise releasing source code to those of us who felt motivated to produce a Linux version but for several reasons, including technical, this was not feasible. However if you would like to run Papyrus-for-DOS in Linux there are several possibilities, none of which I have tried! The first would be Crossover Office with which I have had splendid success for Windows-only programmes, getting them to run in an otherwise Linux environment. VMware would be another choice, running genuine DOS in a VMware session. DOSemu (DOS emulator) also comes to mind. Look on Sourceforge (www.sourceforge.org) for example, for more inspirations. And if you were thinking in terms of neuroimaging, feel free to contact me off-list and I may be able to suggest a direction in which to go for viewers, etc. Kind regards, Denis From hsp01ses at gold.ac.uk Wed Mar 23 09:40:41 2005 From: hsp01ses at gold.ac.uk (Sharon Smith) Date: Wed Mar 23 09:40:45 2005 Subject: [Papyrus-L] Papyrus and Word 2003/Windows XP Home In-Reply-To: <20050323223123.quhpey8s4gcgksgk@webmail-1.ucs.uwa.edu.au> References: <20050323223123.quhpey8s4gcgksgk@webmail-1.ucs.uwa.edu.au> Message-ID: <1241.217.44.145.218.1111588841.squirrel@secure2.gold.ac.uk> Dear fellow list members, I have installed Papyrus 7.0.17 on my computer (platform Windows Home XP) and am using Word 2003. Unfortunately I can't cite references or notecards as they don't appear on the Office Clipboard. Could someone please advise me of a way to solve/workaround this problem? With thanks in advance, -- Sharon Smith From raisa.deber at utoronto.ca Wed Mar 23 09:51:44 2005 From: raisa.deber at utoronto.ca (raisa.deber@utoronto.ca) Date: Wed Mar 23 09:52:19 2005 Subject: [Papyrus-L] Papyrus and Word 2003/Windows XP Home In-Reply-To: <1241.217.44.145.218.1111588841.squirrel@secure2.gold.ac.uk> References: <20050323223123.quhpey8s4gcgksgk@webmail-1.ucs.uwa.edu.au> <1241.217.44.145.218.1111588841.squirrel@secure2.gold.ac.uk> Message-ID: <1111589504.42418280494d5@webmail.utoronto.ca> Quoting Sharon Smith : > Dear fellow list members, > > I have installed Papyrus 7.0.17 on my computer (platform Windows Home XP) > and am using Word 2003. Unfortunately I can't cite references or > notecards as they don't appear on the Office Clipboard. Could someone > please advise me of a way to solve/workaround this problem? Go to Preferences Go to OS2/NT Clipboard Say Yes you want to use a disk file instead of the clipboard Give it a name (I use c:\pap\cited.txt) Then when you ask Papyrus to cite to the clipboard, it will insert the material into that file. Then from Word, just ask it to insert that disk file whenever you want to cite. By the way, you will also find that text extract won't work properly with the Word 2003 file format (or with its version of RTF). Make sure you have the right converters; Word 6/95 works well. So does Word Perfect, if it will save to that. (I'm still on Windows 2000 with an earlier version of office, so don't know what converters are supplied with Wood 2003; you may need to install a converter pack.) Sincerely Raisa Deber > > With thanks in advance, > > -- > Sharon Smith > > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > From raisa.deber at utoronto.ca Wed Mar 23 09:51:45 2005 From: raisa.deber at utoronto.ca (raisa.deber@utoronto.ca) Date: Wed Mar 23 09:52:22 2005 Subject: [Papyrus-L] Papyrus and Word 2003/Windows XP Home In-Reply-To: <1241.217.44.145.218.1111588841.squirrel@secure2.gold.ac.uk> References: <20050323223123.quhpey8s4gcgksgk@webmail-1.ucs.uwa.edu.au> <1241.217.44.145.218.1111588841.squirrel@secure2.gold.ac.uk> Message-ID: <1111589505.42418281aaf97@webmail.utoronto.ca> Quoting Sharon Smith : > Dear fellow list members, > > I have installed Papyrus 7.0.17 on my computer (platform Windows Home XP) > and am using Word 2003. Unfortunately I can't cite references or > notecards as they don't appear on the Office Clipboard. Could someone > please advise me of a way to solve/workaround this problem? Go to Preferences Go to OS2/NT Clipboard Say Yes you want to use a disk file instead of the clipboard Give it a name (I use c:\pap\cited.txt) Then when you ask Papyrus to cite to the clipboard, it will insert the material into that file. Then from Word, just ask it to insert that disk file whenever you want to cite. By the way, you will also find that text extract won't work properly with the Word 2003 file format (or with its version of RTF). Make sure you have the right converters; Word 6/95 works well. So does Word Perfect, if it will save to that. (I'm still on Windows 2000 with an earlier version of office, so don't know what converters are supplied with Wood 2003; you may need to install a converter pack.) Sincerely Raisa Deber > > With thanks in advance, > > -- > Sharon Smith > > _______________________________________________ > Papyrus-L mailing list > Papyrus-L@ResearchSoftwareDesign.com > http://five.pairlist.net/mailman/listinfo/papyrus-l > From arete at vims.edu Wed Mar 23 16:05:15 2005 From: arete at vims.edu (Paul Gerdes) Date: Wed Mar 23 16:05:18 2005 Subject: [Papyrus-L] Re: Papyrus-L Digest, Vol 10, Issue 3 In-Reply-To: <20050323170028.9A9B21A92D@five.pairlist.net> References: <20050323170028.9A9B21A92D@five.pairlist.net> Message-ID: <6.1.2.0.0.20050323160329.01e26530@pop.vims.edu> I have a database in papyrus 5 I think. Somehow it is corrupted. All I need to do is get my stuff out once. Any help would be greatly apreciated.